Reference frame: Origins (Ox, Oy, Oz) followed by the direction cosines of the X- (Xx, Yx, Zx), Y- (Yx, Yx, Yx), and Z- (Zx, Zx, Zx) axes ***************************************************************************************** Local base-pair reference frames Ox Oy Oz Xx Xy Xz Yx Yy Yz Zx Zy Zz 1 C-G 17.13 25.96 25.88 -0.99 0.15 0.04 0.12 0.89 -0.45 -0.10 -0.44 -0.89 2 G-C 16.56 24.81 22.95 -0.74 0.67 -0.07 0.64 0.67 -0.39 -0.21 -0.33 -0.92 3 C-G 16.16 23.97 19.28 -0.12 0.88 -0.46 0.98 0.02 -0.22 -0.18 -0.48 -0.86 4 G-C 16.18 22.58 16.55 0.34 0.88 -0.34 0.92 -0.38 -0.06 -0.18 -0.30 -0.94 5 A-T 15.25 21.34 13.51 0.83 0.48 -0.28 0.53 -0.83 0.18 -0.14 -0.30 -0.94 6 A-T 14.88 20.69 10.27 0.99 -0.12 -0.10 -0.09 -0.95 0.31 -0.13 -0.30 -0.94 7 T-A 14.58 20.27 7.04 0.78 -0.62 0.04 -0.60 -0.73 0.34 -0.18 -0.29 -0.94 8 T-A 14.30 19.66 3.87 0.31 -0.93 0.20 -0.94 -0.26 0.23 -0.16 -0.26 -0.95 9 C-G 13.99 19.06 0.45 -0.40 -0.87 0.27 -0.90 0.43 0.04 -0.15 -0.23 -0.96 10 G-C 12.36 18.29 -2.24 -0.75 -0.57 0.34 -0.62 0.78 -0.04 -0.24 -0.25 -0.94 11 C-G 12.88 18.31 -5.84 -0.99 0.07 0.10 0.05 0.99 -0.16 -0.11 -0.15 -0.98 12 G-C 12.73 17.99 -9.02 -0.78 0.61 0.11 0.58 0.78 -0.21 -0.21 -0.10 -0.97 ***************************************************************************************** Local middle reference frames Ox Oy Oz Xx Xy Xz Yx Yy Yz Zx Zy Zz 1 CG/CG 16.84 25.38 24.41 -0.90 0.43 -0.02 0.40 0.82 -0.41 -0.16 -0.38 -0.91 2 GC/GC 16.36 24.39 21.11 -0.46 0.84 -0.28 0.86 0.36 -0.36 -0.20 -0.40 -0.89 3 CG/CG 16.17 23.28 17.92 0.11 0.90 -0.41 0.98 -0.17 -0.12 -0.18 -0.39 -0.90 4 GA/TC 15.72 21.96 15.03 0.62 0.71 -0.33 0.77 -0.63 0.07 -0.16 -0.30 -0.94 5 AA/TT 15.07 21.01 11.89 0.96 0.19 -0.20 0.24 -0.94 0.26 -0.14 -0.30 -0.94 6 AT/AT 14.73 20.48 8.65 0.92 -0.39 -0.03 -0.36 -0.87 0.33 -0.16 -0.29 -0.94 7 TT/AA 14.44 19.97 5.45 0.57 -0.81 0.13 -0.80 -0.52 0.30 -0.17 -0.27 -0.95 8 TC/GA 14.15 19.36 2.16 -0.05 -0.97 0.25 -0.99 0.09 0.14 -0.16 -0.24 -0.96 9 CG/CG 13.18 18.67 -0.90 -0.59 -0.74 0.31 -0.78 0.62 0.01 -0.20 -0.24 -0.95 10 GC/GC 12.62 18.30 -4.04 -0.93 -0.27 0.23 -0.31 0.94 -0.14 -0.18 -0.20 -0.96 11 CG/CG 12.80 18.15 -7.43 -0.93 0.35 0.11 0.33 0.93 -0.18 -0.16 -0.13 -0.98 ***************************************************************************************** Local middle helical reference frames Ox Oy Oz Xx Xy Xz Yx Yy Yz Zx Zy Zz 1 CG/CG 15.99 26.43 24.17 -0.91 0.40 -0.11 0.41 0.89 -0.18 0.03 -0.21 -0.98 2 GC/GC 17.37 23.05 21.31 -0.45 0.87 -0.22 0.81 0.28 -0.52 -0.39 -0.41 -0.82 3 CG/CG 15.84 24.53 17.27 0.11 0.92 -0.38 0.97 -0.01 0.26 0.23 -0.39 -0.89 4 GA/TC 15.59 22.51 14.84 0.61 0.70 -0.37 0.78 -0.62 0.10 -0.16 -0.35 -0.92 5 AA/TT 15.65 20.84 11.86 0.96 0.18 -0.21 0.24 -0.93 0.27 -0.14 -0.31 -0.94 6 AT/AT 15.26 20.22 8.64 0.92 -0.39 -0.04 -0.37 -0.89 0.26 -0.14 -0.22 -0.97 7 TT/AA 15.05 19.77 5.44 0.58 -0.80 0.18 -0.81 -0.53 0.27 -0.12 -0.30 -0.95 8 TC/GA 14.55 19.21 2.15 -0.04 -0.96 0.27 -0.99 0.08 0.10 -0.12 -0.26 -0.96 9 CG/CG 11.86 20.64 -0.66 -0.62 -0.76 0.18 -0.75 0.65 0.15 -0.23 -0.04 -0.97 10 GC/GC 14.37 17.46 -3.79 -0.94 -0.29 0.17 -0.33 0.88 -0.34 -0.05 -0.38 -0.93 11 CG/CG 12.05 18.00 -7.38 -0.93 0.35 0.09 0.36 0.93 0.02 -0.08 0.04 -1.00 ***************************************************************************************** Local strand I base reference frames Ox Oy Oz Xx Xy Xz Yx Yy Yz Zx Zy Zz 1 C 16.98 25.91 25.88 -0.99 0.08 -0.09 0.11 0.86 -0.50 0.04 -0.51 -0.86 2 G 16.53 24.59 22.77 -0.77 0.61 -0.17 0.61 0.65 -0.46 -0.17 -0.46 -0.87 3 C 16.05 24.04 19.17 -0.13 0.85 -0.50 0.98 0.04 -0.19 -0.14 -0.52 -0.84 4 G 16.09 22.49 16.60 0.32 0.85 -0.42 0.90 -0.41 -0.14 -0.29 -0.33 -0.90 5 A 15.21 21.37 13.50 0.81 0.42 -0.40 0.51 -0.85 0.15 -0.27 -0.32 -0.91 6 A 14.91 20.70 10.23 0.96 -0.21 -0.21 -0.14 -0.94 0.32 -0.26 -0.28 -0.92 7 T 14.59 20.30 6.94 0.73 -0.68 -0.08 -0.62 -0.70 0.34 -0.29 -0.20 -0.94 8 T 14.34 19.73 3.84 0.24 -0.97 0.07 -0.94 -0.22 0.24 -0.22 -0.13 -0.97 9 C 14.01 18.94 0.48 -0.41 -0.89 0.19 -0.89 0.44 0.15 -0.21 -0.10 -0.97 10 G 12.39 18.27 -2.37 -0.78 -0.57 0.26 -0.61 0.79 -0.09 -0.16 -0.23 -0.96 11 C 12.79 18.23 -5.92 -1.00 0.03 -0.05 0.04 0.99 -0.16 0.04 -0.16 -0.99 12 G 12.78 17.87 -9.15 -0.80 0.60 0.07 0.56 0.79 -0.25 -0.20 -0.16 -0.97 ***************************************************************************************** Local strand II base reference frames Ox Oy Oz Xx Xy Xz Yx Yy Yz Zx Zy Zz 1 G 17.28 26.02 25.87 -0.96 0.22 0.17 0.14 0.91 -0.39 -0.24 -0.35 -0.90 2 C 16.58 25.03 23.13 -0.70 0.71 0.05 0.67 0.67 -0.31 -0.25 -0.19 -0.95 3 G 16.28 23.91 19.38 -0.12 0.90 -0.42 0.97 0.01 -0.26 -0.23 -0.44 -0.87 4 C 16.28 22.67 16.51 0.34 0.90 -0.26 0.94 -0.34 0.03 -0.06 -0.26 -0.96 5 T 15.30 21.30 13.51 0.84 0.53 -0.15 0.55 -0.81 0.22 -0.01 -0.26 -0.96 6 T 14.86 20.68 10.31 1.00 -0.03 0.01 -0.03 -0.95 0.32 -0.00 -0.32 -0.95 7 A 14.58 20.24 7.14 0.82 -0.55 0.17 -0.57 -0.75 0.34 -0.06 -0.37 -0.93 8 A 14.26 19.60 3.89 0.37 -0.87 0.32 -0.92 -0.31 0.24 -0.11 -0.38 -0.92 9 G 13.98 19.17 0.43 -0.40 -0.84 0.36 -0.91 0.40 -0.07 -0.09 -0.35 -0.93 10 C 12.33 18.31 -2.11 -0.70 -0.57 0.42 -0.63 0.78 0.00 -0.33 -0.26 -0.91 11 G 12.97 18.38 -5.76 -0.96 0.10 0.24 0.07 0.98 -0.16 -0.26 -0.14 -0.96 12 C 12.68 18.10 -8.89 -0.77 0.63 0.15 0.60 0.78 -0.17 -0.22 -0.04 -0.97 **************************************************************************** Local strand I base step parameters step Shift Slide Rise Tilt Roll Twist 1 C/G 0.35 0.26 3.39 2.21 12.27 31.38 2 G/C 1.11 0.69 3.42 0.16 -4.01 45.02 3 C/G -0.20 0.71 2.92 10.04 9.96 24.80 4 G/A 0.06 0.06 3.41 -0.47 1.10 37.82 5 A/A 0.66 -0.25 3.27 2.56 1.35 39.67 6 A/T 0.38 -0.64 3.25 3.61 -3.65 31.03 7 T/T 0.34 -0.46 3.10 5.79 -1.29 33.80 8 T/C 0.35 -0.45 3.43 0.38 -1.36 38.80 9 C/G 0.79 0.71 3.17 6.75 3.50 28.83 10 G/C -0.77 0.45 3.46 0.06 -12.21 39.61 11 C/G -0.18 0.24 3.23 4.42 13.44 33.15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ave. 0.26 0.12 3.28 3.23 1.74 34.90 s.d. 0.52 0.50 0.17 3.31 7.71 5.84 **************************************************************************** Local strand I base helical parameters step X-disp Y-disp h-Rise Incl. Tip h-Twist 1 C/G -1.66 -0.22 3.27 21.64 -3.89 33.71 2 G/C 1.27 -1.43 3.36 -5.23 -0.21 45.19 3 C/G -0.66 2.52 2.72 21.14 -21.31 28.50 4 G/A -0.05 -0.16 3.41 1.69 0.73 37.84 5 A/A -0.52 -0.68 3.30 1.99 -3.76 39.77 6 A/T -0.49 -0.01 3.32 -6.77 -6.69 31.44 7 T/T -0.59 0.30 3.13 -2.19 -9.86 34.31 8 T/C -0.50 -0.48 3.45 -2.04 -0.57 38.82 9 C/G 0.64 -0.12 3.33 6.89 -13.26 29.79 10 G/C 2.00 1.10 3.19 -17.53 -0.08 41.38 11 C/G -1.53 0.92 3.05 22.33 -7.34 35.97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ave. -0.19 0.16 3.23 3.81 -6.02 36.06 s.d. 1.11 1.05 0.21 13.03 6.76 5.12 **************************************************************************** Local strand II base step parameters step Shift Slide Rise Tilt Roll Twist 1 G/C -0.12 -0.15 2.99 -8.75 4.90 33.12 2 C/G -0.16 0.65 3.87 5.43 -14.14 42.99 3 G/C -0.09 0.47 3.09 -8.14 12.53 25.02 4 C/T -0.96 -0.35 3.28 -2.70 1.63 37.08 5 T/T -0.31 -0.43 3.25 -3.15 -0.63 34.97 6 T/A -0.39 -0.60 3.14 -4.30 -2.06 33.23 7 A/A -0.53 -0.37 3.27 -2.47 -0.99 33.10 8 A/G -0.89 -0.03 3.39 0.98 -1.99 45.53 9 G/C 0.62 0.83 2.97 -14.04 4.67 23.60 10 C/G -1.83 0.27 3.20 -5.73 -6.54 43.34 11 G/C -0.43 0.18 3.12 -5.97 0.10 32.97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ave. -0.46 0.04 3.23 -4.44 -0.23 35.00 s.d. 0.62 0.47 0.24 5.14 6.76 7.02 **************************************************************************** Local strand II base helical parameters step X-disp Y-disp h-Rise Incl. Tip h-Twist 1 G/C -0.94 -1.03 2.88 8.37 14.92 34.56 2 C/G 2.28 0.76 3.45 -18.62 -7.15 45.46 3 G/C -1.77 -1.59 2.89 26.16 16.99 29.09 4 C/T -0.77 1.14 3.32 2.55 4.23 37.21 5 T/T -0.63 0.04 3.27 -1.04 5.22 35.12 6 T/A -0.71 -0.02 3.19 -3.57 7.47 33.56 7 A/A -0.48 0.51 3.30 -1.73 4.33 33.20 8 A/G 0.14 1.24 3.36 -2.57 -1.26 45.58 9 G/C 0.74 -4.27 2.36 10.24 30.75 27.80 10 C/G 0.97 1.90 3.33 -8.75 7.66 44.16 11 G/C 0.30 -0.20 3.15 0.18 10.42 33.49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ave. -0.08 -0.14 3.14 1.02 8.51 36.29 s.d. 1.12 1.70 0.32 11.41 10.00 6.22 **************************************************************************** xyz coordinates of C1' atoms bp xI yI zI xII yII zII 1 C-G 20.037 30.405 23.469 18.894 20.541 27.486 2 G-C 21.722 26.527 20.744 14.664 19.604 24.585 3 C-G 21.682 22.203 19.512 11.372 21.653 21.822 4 G-C 20.090 18.125 16.827 10.377 22.256 16.884 5 A-T 15.929 15.797 15.300 10.285 24.306 12.618 6 A-T 11.810 16.185 12.511 12.544 25.808 8.521 7 T-A 9.471 18.252 9.036 15.603 25.596 4.871 8 T-A 8.709 20.942 5.040 18.284 23.347 1.713 9 C-G 10.221 23.504 0.941 19.885 19.133 -0.048 10 G-C 11.122 23.882 -3.532 17.454 15.513 -3.235 11 C-G 15.425 23.519 -6.536 14.985 12.780 -5.476 12 G-C 17.792 20.587 -10.665 11.265 12.323 -8.375 **************************************************************************** xyz coordinates of RN9/YN1 atoms bp xI yI zI xII yII zII 1 C-G 18.770 29.711 23.733 17.884 21.596 27.425 2 G-C 20.293 26.737 20.884 14.434 21.047 24.462 3 C-G 20.674 23.119 18.988 12.028 22.718 21.090 4 G-C 19.757 19.506 16.488 11.582 23.058 16.698 5 A-T 16.461 17.015 14.676 11.753 24.267 12.716 6 A-T 13.051 16.742 11.953 13.716 24.979 8.867 7 T-A 10.850 18.009 8.588 16.096 24.315 5.390 8 T-A 9.786 19.985 4.858 17.934 22.099 2.396 9 C-G 10.496 22.063 0.918 18.643 18.429 0.279 10 G-C 10.650 22.581 -3.105 16.092 15.513 -2.673 11 C-G 14.230 22.675 -6.585 13.910 13.758 -5.331 12 G-C 16.369 20.677 -10.371 10.916 13.750 -8.299 **************************************************************************** xyz coordinates of RC8/YC6 atoms bp xI yI zI xII yII zII 1 C-G 17.576 30.257 23.341 16.572 21.517 27.831 2 G-C 19.536 27.799 20.464 13.203 21.593 24.707 3 C-G 21.030 24.206 18.236 11.473 23.887 20.647 4 G-C 20.562 20.452 15.892 11.513 24.384 16.372 5 A-T 17.734 17.239 14.207 12.509 25.389 12.425 6 A-T 14.253 16.097 11.802 14.995 25.475 8.711 7 T-A 11.414 16.754 8.659 17.391 23.890 5.486 8 T-A 9.556 18.638 5.074 18.791 21.090 2.750 9 C-G 9.509 21.162 1.213 18.497 17.151 0.767 10 G-C 9.376 22.181 -2.794 15.540 14.379 -2.131 11 C-G 12.987 23.225 -6.763 12.619 13.498 -4.942 12 G-C 15.562 21.794 -10.380 9.632 14.137 -8.014 **************************************************************************** xyz coordinates of P atoms w.r.t. the middle frame of each dimer step xI yI zI xII yII zII 1 CG/CG -3.27 8.76 -0.32 -1.21 8.80 1.06 2 GC/GC -2.63 8.99 -0.24 -1.91 8.79 0.64 3 CG/CG -2.89 9.22 0.00 -3.54 9.06 -1.03 4 GA/TC -2.76 8.74 0.85 -3.58 8.95 -1.50 5 AA/TT -3.37 8.93 -0.18 -3.50 8.97 -0.63 6 AT/AT -3.55 9.11 -0.34 -3.34 9.00 -0.07 7 TT/AA -3.58 9.08 -0.48 -3.48 9.07 -0.82 8 TC/GA -2.89 8.86 -0.58 -2.59 8.43 0.86 9 CG/CG -3.90 8.74 -1.59 -1.86 8.96 0.72 10 GC/GC -2.74 8.77 0.08 -2.44 9.30 -0.16 11 CG/CG -3.29 8.69 -1.40 -2.63 9.30 -0.55 **************************************************************************** xyz coordinates of P atoms w.r.t. the middle helix frame of each dimer step xIH yIH zIH xIIH yIIH zIIH 1 CG/CG -4.40 7.91 2.13 -2.62 8.92 3.07 2 GC/GC -0.90 8.43 -2.12 -0.27 9.10 -0.94 3 CG/CG -4.32 8.96 3.63 -4.88 8.17 2.84 4 GA/TC -3.10 9.16 1.26 -3.90 8.54 -1.33 5 AA/TT -3.91 8.64 -0.05 -4.03 9.27 -0.55 6 AT/AT -4.14 9.02 -1.03 -3.92 9.00 -0.82 7 TT/AA -4.05 9.45 -0.90 -4.03 8.66 -0.91 8 TC/GA -3.00 9.25 -0.97 -2.70 8.04 0.58 9 CG/CG -3.35 6.55 0.29 -1.39 11.06 1.81 10 GC/GC -1.42 10.01 -1.59 -0.99 7.64 -2.26 11 CG/CG -3.96 9.19 0.36 -3.29 8.83 1.19 **************************************************************************** xyz coordinates of O1P atoms w.r.t. the middle frame of each dimer step xI yI zI xII yII zII 1 CG/CG -4.44 9.47 -0.88 -1.69 10.19 1.34 2 GC/GC -3.12 10.17 -0.98 -2.26 10.08 0.04 3 CG/CG -3.91 10.26 -0.40 -4.79 9.71 -1.52 4 GA/TC -3.43 10.04 0.61 -4.73 9.59 -2.22 5 AA/TT -4.53 9.74 -0.64 -4.53 9.90 -1.11 6 AT/AT -4.70 9.95 -0.65 -4.44 9.97 -0.22 7 TT/AA -4.68 9.97 -0.91 -4.63 9.79 -1.44 8 TC/GA -3.99 9.83 -0.88 -3.65 9.48 0.90 9 CG/CG -5.08 9.11 -2.41 -2.38 10.35 0.79 10 GC/GC -2.85 9.69 -1.08 -3.38 10.43 -0.31 11 CG/CG -3.99 9.68 -2.25 -3.60 10.31 -1.07 **************************************************************************** xyz coordinates of O1P atoms w.r.t. the middle helix frame of each dimer step xIH yIH zIH xIIH yIIH zIIH 1 CG/CG -5.61 8.72 1.87 -3.14 10.20 3.62 2 GC/GC -1.34 9.44 -3.10 -0.66 10.25 -1.76 3 CG/CG -5.33 10.07 3.64 -6.14 8.96 2.69 4 GA/TC -3.78 10.47 1.10 -5.02 9.20 -2.07 5 AA/TT -5.07 9.45 -0.49 -5.06 10.21 -1.03 6 AT/AT -5.30 9.83 -1.40 -5.02 9.95 -1.06 7 TT/AA -5.13 10.33 -1.42 -5.21 9.36 -1.49 8 TC/GA -4.09 10.21 -1.31 -3.76 9.10 0.60 9 CG/CG -4.62 7.03 -0.31 -1.93 12.43 2.02 10 GC/GC -1.61 10.67 -2.90 -1.91 8.71 -2.71 11 CG/CG -4.67 10.33 -0.28 -4.26 9.92 0.85 **************************************************************************** xyz coordinates of O2P atoms w.r.t. the middle frame of each dimer step xI yI zI xII yII zII 1 CG/CG -2.38 9.44 0.66 -0.01 8.30 1.77 2 GC/GC -1.58 9.15 0.81 -0.82 8.69 1.62 3 CG/CG -1.71 9.62 0.76 -2.49 9.87 -0.39 4 GA/TC -1.68 8.62 1.87 -2.66 9.76 -0.67 5 AA/TT -2.49 9.43 0.89 -2.53 9.43 0.39 6 AT/AT -2.56 9.55 0.66 -2.25 9.25 0.91 7 TT/AA -2.59 9.56 0.49 -2.65 9.74 0.20 8 TC/GA -1.91 9.15 0.51 -1.64 8.30 1.98 9 CG/CG -3.06 9.78 -0.98 -0.61 8.60 1.45 10 GC/GC -2.29 9.29 1.39 -1.16 9.48 0.56 11 CG/CG -2.68 9.12 -0.11 -1.51 9.73 0.32 **************************************************************************** xyz coordinates of O2P atoms w.r.t. the middle helix frame of each dimer step xIH yIH zIH xIIH yIIH zIIH 1 CG/CG -3.42 8.34 3.16 -1.49 8.24 3.74 2 GC/GC 0.09 8.79 -1.06 0.88 9.18 -0.03 3 CG/CG -3.17 9.01 4.52 -3.80 8.67 3.72 4 GA/TC -1.98 9.01 2.24 -3.02 9.32 -0.43 5 AA/TT -3.02 9.13 1.02 -3.07 9.71 0.48 6 AT/AT -3.14 9.55 -0.08 -2.84 9.32 0.14 7 TT/AA -3.11 9.96 0.10 -3.15 9.35 0.06 8 TC/GA -2.04 9.57 0.13 -1.73 7.96 1.69 9 CG/CG -2.42 7.49 0.93 -0.24 10.58 2.64 10 GC/GC -0.90 10.79 -0.44 0.24 7.98 -1.51 11 CG/CG -3.32 9.37 1.69 -2.19 9.09 2.15 **************************************************************************** xyz coordinates of P atoms bp xI yI zI xII yII zII 1 C-G ---- ---- ---- 14.596 18.068 29.054 2 G-C 23.337 31.278 21.156 9.791 19.880 25.340 3 C-G 25.388 25.500 18.860 6.749 21.241 19.556 4 G-C 24.871 19.058 17.972 6.372 24.633 14.185 5 A-T 20.603 14.194 15.744 9.501 28.568 9.648 6 A-T 13.954 12.080 15.071 14.865 29.619 5.710 7 T-A 8.258 14.006 12.104 19.585 27.272 1.543 8 T-A 5.196 18.285 8.120 22.722 21.352 1.129 9 C-G 5.633 23.056 3.231 21.424 14.639 -0.847 10 G-C 8.967 27.410 -0.543 17.740 10.184 -3.461 11 C-G 12.458 27.280 -5.963 12.053 8.530 -6.610 12 G-C 18.981 25.204 -7.937 ---- ---- ---- ******************************************************************************************* Phosphorus-phosphorus distance in Angstroms 1 2 3 4 5 6 7 8 9 10 11 12 G C G C T T A A G C G C 1 C ---- ---- ---- ---- ---- ---- ---- ---- ---- ---- ---- ---- 2 G 17.7 18.2 19.5 19.5 18.2 17.7 20.4 22.4 27.7 32.9 37.6 ---- 3 C 16.6 17.8 19.1 19.6 18.6 17.3 18.3 18.4 22.8 28.1 33.4 ---- 4 G 15.1 16.8 18.3 19.7 19.9 19.0 19.1 17.1 19.6 24.3 29.7 ---- 5 A 15.1 15.5 16.0 17.7 19.2 19.3 19.3 16.4 16.6 19.8 24.6 ---- 6 A 15.2 13.6 12.5 14.7 17.9 19.9 21.1 18.9 17.8 19.0 22.1 ---- 7 T 18.5 14.6 10.5 11.0 14.8 18.1 20.4 19.6 18.5 18.6 19.9 ---- 8 T 22.9 17.9 11.9 8.9 11.3 15.1 18.2 19.1 18.9 18.9 19.0 ---- 9 C 27.8 22.7 16.5 11.1 9.3 11.6 14.7 17.3 18.4 18.9 18.7 ---- 10 G 31.5 27.0 21.1 15.2 10.3 8.9 10.8 15.1 17.8 19.6 20.1 ---- 11 C 36.3 32.3 26.8 21.2 15.9 12.1 10.4 13.8 16.3 18.1 18.8 ---- 12 G 37.9 34.9 30.4 25.5 20.3 14.9 9.7 10.5 13.0 15.7 18.1 ---- **************************************************************************** Strand I helix radius step P O4' C1' 1 C/G 9.7 7.1 6.4 2 G/C 7.8 4.5 4.1 3 C/G 12.1 9.2 8.4 4 G/A 9.0 6.4 5.8 5 A/A 9.2 6.2 5.6 6 A/T 9.9 6.4 6.0 7 T/T 10.2 6.9 6.4 8 T/C 9.1 6.2 5.7 9 C/G 9.4 6.0 5.6 10 G/C 9.5 6.2 6.2 11 C/G 10.8 8.0 7.3 **************************************************************************** Strand II helix radius step P O4' C1' 1 G/C 9.9 8.2 7.3 2 C/G 8.0 4.8 4.4 3 G/C 11.7 8.7 8.0 4 C/T 9.1 5.9 5.3 5 T/T 9.8 6.6 6.1 6 T/A 9.9 6.7 6.2 7 A/A 9.5 6.1 5.7 8 A/G 7.7 5.2 4.7 9 G/C 13.1 10.7 9.8 10 C/G 7.6 4.3 3.7 11 G/C 9.8 6.5 6.0 **************************************************************************************** Base-pair helix axis Ox Oy Oz Xx Xy Xz Yx Yy Yz Zx Zy Zz 1 CG/CG 15.95 26.75 25.68 -0.99 0.12 -0.05 0.13 0.97 -0.20 0.03 -0.21 -0.98 16.04 26.11 22.66 -0.75 0.64 -0.16 0.66 0.74 -0.14 0.03 -0.21 -0.98 2 GC/GC 18.05 23.78 22.76 -0.72 0.69 -0.01 0.57 0.59 -0.57 -0.39 -0.41 -0.82 16.68 22.32 19.86 -0.11 0.91 -0.41 0.92 -0.07 -0.40 -0.39 -0.41 -0.82 3 CG/CG 15.49 25.12 18.59 -0.12 0.89 -0.43 0.96 0.21 0.16 0.23 -0.39 -0.89 16.18 23.95 15.95 0.33 0.89 -0.31 0.91 -0.23 0.34 0.23 -0.39 -0.89 4 GA/TC 15.86 23.10 16.41 0.33 0.86 -0.38 0.93 -0.36 -0.02 -0.16 -0.35 -0.92 15.32 21.92 13.27 0.83 0.46 -0.32 0.54 -0.82 0.21 -0.16 -0.35 -0.92 5 AA/TT 15.89 21.35 13.40 0.83 0.47 -0.28 0.53 -0.82 0.19 -0.14 -0.31 -0.94 15.41 20.33 10.31 0.99 -0.13 -0.11 -0.08 -0.94 0.33 -0.14 -0.31 -0.94 6 AT/AT 15.48 20.58 10.21 0.99 -0.13 -0.11 -0.10 -0.97 0.23 -0.14 -0.22 -0.97 15.04 19.86 7.07 0.78 -0.63 0.03 -0.61 -0.75 0.26 -0.14 -0.22 -0.97 7 TT/AA 15.25 20.25 6.96 0.79 -0.61 0.09 -0.60 -0.74 0.31 -0.12 -0.30 -0.95 14.86 19.29 3.91 0.32 -0.92 0.25 -0.94 -0.27 0.21 -0.12 -0.30 -0.95 8 TC/GA 14.76 19.67 3.81 0.31 -0.92 0.21 -0.94 -0.28 0.19 -0.12 -0.26 -0.96 14.34 18.76 0.49 -0.40 -0.87 0.29 -0.91 0.42 0.00 -0.12 -0.26 -0.96 9 CG/CG 12.21 20.70 0.81 -0.43 -0.89 0.14 -0.87 0.45 0.19 -0.23 -0.04 -0.97 11.50 20.58 -2.13 -0.78 -0.59 0.21 -0.58 0.81 0.11 -0.23 -0.04 -0.97 10 GC/GC 14.45 18.08 -2.27 -0.76 -0.59 0.28 -0.65 0.71 -0.26 -0.05 -0.38 -0.93 14.29 16.84 -5.32 -1.00 0.05 0.03 0.03 0.93 -0.38 -0.05 -0.38 -0.93 11 CG/CG 12.17 17.93 -5.80 -0.99 0.07 0.08 0.07 1.00 0.04 -0.08 0.04 -1.00 11.93 18.07 -8.95 -0.79 0.61 0.09 0.61 0.79 -0.01 -0.08 0.04 -1.00 **************************************************************************************** Strand I helix axis Ox Oy Oz Xx Xy Xz Yx Yy Yz Zx Zy Zz 1 C/G 15.35 26.29 25.80 -0.99 0.10 -0.03 0.10 0.98 -0.15 0.01 -0.15 -0.99 15.39 25.80 22.57 -0.77 0.63 -0.11 0.64 0.76 -0.11 0.01 -0.15 -0.99 2 G/C 18.36 24.67 22.21 -0.77 0.61 -0.17 0.59 0.60 -0.54 -0.23 -0.52 -0.83 17.59 22.94 19.43 -0.13 0.86 -0.50 0.96 -0.01 -0.26 -0.23 -0.52 -0.83 3 C/G 13.51 24.29 18.67 -0.14 0.98 -0.16 0.97 0.16 0.16 0.18 -0.13 -0.98 13.99 23.93 16.02 0.35 0.94 -0.06 0.92 -0.33 0.21 0.18 -0.13 -0.98 4 G/A 16.25 22.46 16.56 0.32 0.84 -0.43 0.91 -0.40 -0.11 -0.27 -0.35 -0.90 15.33 21.26 13.50 0.81 0.42 -0.41 0.52 -0.84 0.17 -0.27 -0.35 -0.90 5 A/A 15.99 21.04 13.44 0.83 0.44 -0.34 0.52 -0.83 0.18 -0.20 -0.32 -0.92 15.33 19.97 10.39 0.97 -0.19 -0.15 -0.13 -0.93 0.35 -0.20 -0.32 -0.92 6 A/T 15.38 20.60 10.19 0.98 -0.18 -0.09 -0.16 -0.96 0.21 -0.13 -0.19 -0.97 14.95 19.97 6.95 0.75 -0.66 0.03 -0.65 -0.73 0.23 -0.13 -0.19 -0.97 7 T/T 15.23 20.14 6.89 0.76 -0.64 0.08 -0.63 -0.71 0.30 -0.14 -0.28 -0.95 14.79 19.25 3.92 0.27 -0.93 0.24 -0.95 -0.23 0.21 -0.14 -0.28 -0.95 8 T/C 14.01 19.14 3.98 0.24 -0.97 0.08 -0.95 -0.22 0.21 -0.18 -0.13 -0.97 13.37 18.70 0.63 -0.41 -0.89 0.19 -0.90 0.43 0.11 -0.18 -0.13 -0.97 9 C/G 14.12 19.54 0.25 -0.34 -0.85 0.40 -0.85 0.46 0.26 -0.40 -0.25 -0.88 12.78 18.69 -2.67 -0.71 -0.51 0.48 -0.57 0.82 0.03 -0.40 -0.25 -0.88 10 G/C 14.63 18.64 -2.49 -0.78 -0.57 0.26 -0.63 0.69 -0.37 0.03 -0.45 -0.89 14.73 17.20 -5.33 -1.00 0.03 -0.05 0.05 0.89 -0.45 0.03 -0.45 -0.89 11 C/G 11.23 17.37 -6.01 -1.00 0.02 0.08 0.04 0.97 0.22 -0.07 0.23 -0.97 11.01 18.06 -8.97 -0.78 0.59 0.19 0.62 0.77 0.14 -0.07 0.23 -0.97 **************************************************************************************** Strand II helix axis Ox Oy Oz Xx Xy Xz Yx Yy Yz Zx Zy Zz 1 G/C 16.50 27.13 25.54 -0.99 0.14 -0.07 0.15 0.95 -0.26 0.03 -0.26 -0.96 16.60 26.37 22.76 -0.73 0.66 -0.21 0.69 0.71 -0.17 0.03 -0.26 -0.96 2 C/G 17.65 22.88 23.23 -0.65 0.74 0.16 0.54 0.59 -0.60 -0.54 -0.30 -0.79 15.80 21.83 20.50 -0.07 0.95 -0.32 0.84 -0.11 -0.53 -0.54 -0.30 -0.79 3 G/C 17.60 25.62 18.40 -0.11 0.74 -0.66 0.96 0.26 0.12 0.26 -0.62 -0.74 18.35 23.82 16.27 0.37 0.77 -0.52 0.89 -0.14 0.43 0.26 -0.62 -0.74 4 C/T 15.46 23.72 16.17 0.33 0.88 -0.33 0.94 -0.33 0.07 -0.05 -0.34 -0.94 15.31 22.59 13.05 0.84 0.50 -0.22 0.55 -0.80 0.26 -0.05 -0.34 -0.94 5 T/T 15.79 21.65 13.36 0.83 0.50 -0.24 0.55 -0.81 0.20 -0.09 -0.30 -0.95 15.48 20.68 10.25 1.00 -0.06 -0.08 -0.03 -0.95 0.30 -0.09 -0.30 -0.95 6 T/A 15.56 20.61 10.23 0.99 -0.07 -0.12 -0.04 -0.97 0.26 -0.13 -0.25 -0.96 15.14 19.81 7.18 0.81 -0.59 0.04 -0.58 -0.77 0.28 -0.13 -0.25 -0.96 7 A/A 15.26 20.35 7.03 0.81 -0.58 0.10 -0.57 -0.76 0.31 -0.11 -0.31 -0.95 14.91 19.33 3.90 0.37 -0.90 0.25 -0.92 -0.32 0.21 -0.11 -0.31 -0.95 8 A/G 15.35 20.13 3.60 0.38 -0.86 0.34 -0.93 -0.33 0.19 -0.06 -0.39 -0.92 15.16 18.82 0.51 -0.40 -0.84 0.38 -0.92 0.39 -0.11 -0.06 -0.39 -0.92 9 G/C 10.44 21.62 1.02 -0.43 -0.89 -0.17 -0.90 0.42 0.11 -0.03 0.20 -0.98 10.38 22.09 -1.29 -0.80 -0.59 -0.10 -0.60 0.78 0.18 -0.03 0.20 -0.98 10 C/G 14.31 17.51 -2.14 -0.74 -0.61 0.30 -0.66 0.73 -0.14 -0.13 -0.30 -0.94 13.87 16.50 -5.29 -0.99 0.07 0.12 0.04 0.95 -0.31 -0.13 -0.30 -0.94 11 G/C 13.28 18.55 -5.81 -0.99 0.08 0.07 0.07 0.99 -0.16 -0.08 -0.15 -0.99 13.04 18.07 -8.91 -0.79 0.61 -0.03 0.60 0.78 -0.17 -0.08 -0.15 -0.99