Rutgers Home Page SAS Home page

Chemistry & Chemical Biology / New Brunswick

Research

Publications

  1. Abramson, S. D.; Kohn, J. "Physical aging of degradable polymers using bio-relevant conditions and hydrated test specimens" Polymeric Materials Science and Engineering 2003, 88, 114.
  2. Anastasiou, T. J.; Uhrich, K. E. "Aminosalicylate-based biodegradable polymers: Syntheses and in vitro characterization of poly(anhydride-ester)s and poly(anhydride-amide)s" Journal of Polymer Science, Part A: Polymer Chemistry 2003, 41, 3667.
  3. Andrec, M.; Levy, R. M.; Talaga, D. S. "Direct determination of kinetic rates from single-molecule photon arrival trajectories using hidden markov models" Journal of Physical Chemistry A 2003, 107, 7454.
  4. Belarmino Alexanders, T. N.; Froehner, S.; Zanette, D.; Farah Joao, P. S.; Bunton Clifford, A.; Romsted Laurence, S. "Effect of alkyl group size on the mechanism of acid hydrolyses of benzaldehyde acetals" Journal of Organic Chemistry 2003, 68, 706.
  5. Berman Helen, M.; Westbrook, J.; Feng, Z.; Iype, L.; Schneider, B.; Zardecki, C. "The nucleic acid database" Methods of Biochemical Analysis 2003, 44, 199.
  6. Berman, H. M.; Westbrook, J. "The need for dictionaries, ontologies, and controlled vocabularies" Omics 2003, 7, 9.
  7. Bourke Sharon, L.; Kohn, J. "Polymers derived from the amino acid l-tyrosine: Polycarbonates, polyarylates and copolymers with poly(ethylene glycol)" Adv Drug Deliv Rev 2003, 55, 447.
  8. Bourke, S. L.; Kohn, J. "Polymers derived from the amino acid l-tyrosine: Polycarbonates, polyarylates and copolymers with poly(ethylene glycol)" Advanced Drug Delivery Reviews 2003, 55, 447.
  9. Chen, H.; Tang, H.; Ebright Richard, H. "Functional interaction between RNA polymerase alpha subunit c-terminal domain and sigma70 in up-element- and activator-dependent transcription" Molecular Cell 2003, 11, 1621.
  10. Chen, W.; Ermanoski, I.; Wu, Q.; Madey, T. E.; Hwu, H. H.; Chen, J. G. "Adsorption and decomposition of acetylene on planar and faceted ir(210)" Journal of Physical Chemistry B 2003, 107, 5231.
  11. Colandrea, V. J.; Rajaraman, S.; Jimenez, L. S. "Synthesis of the mitomycin and fr900482 ring systems via dimethyldioxirane oxidation" Organic Letters 2003, 5, 785.
  12. Du, P.; Andrec, M.; Levy, R. M. "Have we seen all structures corresponding to short protein fragments in the protein data bank? An update" Protein Engineering 2003, 16, 407.
  13. Emge, T. J.; Clements, M. J.; Myers, D. S.; Knapp, S. "(5-bromopyrrol-3-yl)cyclohexylmethanone" Acta Crystallographica, Section E: Structure Reports Online 2003, E59, o425.
  14. Frank, M. M.; Chabal, Y. J.; Green, M. L.; Delabie, A.; Brijs, B.; Wilk, G. D.; Ho, M.-Y.; da Rosa, E. B. O.; Baumvol, I. J. R.; Stedile, F. C. "Enhanced initial growth of atomic-layer-deposited metal oxides on hydrogen-terminated silicon" Applied Physics Letters 2003, 83, 740.
  15. Frank, M. M.; Chabal, Y. J.; Wilk, G. D. "Nucleation and interface formation mechanisms in atomic layer deposition of gate oxides" Applied Physics Letters 2003, 82, 4758.
  16. Frank, M. M.; de Boer, B.; Chabal, Y. J.; Bao, Z. "Self-assembled monolayers of conjugated thiols studied by infrared spectroscopy: Structure and metal electrode deposition" Polymer Preprints (American Chemical Society, Division of Polymer Chemistry) 2003, 44, 383.
  17. Goncharova, L. V.; Hinch, B. J.; Hellman, A.; Hassel, M.; Persson, M. "Hd j != 0 bound state resonances above the cu (001) surface: The effects of physisorption anisotropy and the observation of anomalous debye-waller behavior at resonance conditions" Physical Chemistry Chemical Physics 2003, 5, 877.
  18.  Hall, G. S. "Plasma source mass spectrometry-the new millennium grenville holland and scott d. Tanner, eds., the royal society of chemistry, cambridge, uk" Journal of the American Society for Mass Spectrometry 2003, 14, 171.
  19. Hall, G. S.; Tinklenberg, J. "Determination of ti, zn, and pb in lead-based house paints by edxrf" Journal of Analytical Atomic Spectrometry 2003, 18, 775.
  20. Jiang, W.; Celik, O.; Zhitenev, N.; Bao, Z.; de Boer, B.; Zaumseil, J.; Chabal, Y. J.; Frank, M. M.; Garfunkel, E. "Structural and electrical characterization of organic monolayers on surfaces" Polymer Preprints (American Chemical Society, Division of Polymer Chemistry) 2003, 44, 372.
  21. Kanzelberger, M.; Zhang, X.; Emge, T. J.; Goldman, A. S.; Zhao, J.; Incarvito, C.; Hartwig, J. F. "Distinct thermodynamics for the formation and cleavage of n-h bonds in aniline and ammonia. Directly-observed reductive elimination of ammonia from an isolated amido hydride complex" Journal of the American Chemical Society 2003, 125, 13644.
  22. Knapp, S.; Kirk, B. A. "Glycosylation with 2'-thio-s-acetyl participation" Tetrahedron Letters 2003, 44, 7601.
  23. Knapp, S.; Morriello, G. J.; Doss, G. A. "Stereoselective ring contraction diverts the mitsunobu reaction of a 6-hydroxy-1,4-diazepan-2-one" Tetrahedron Letters 2003, 44, 2645.
  24. Levy, R. M.; Zhang, L. Y.; Gallicchio, E.; Felts, A. K. "On the nonpolar hydration free energy of proteins: Surface area and continuum solvent models for the solute-solvent interaction energy" Journal of the American Chemical Society 2003, 125, 9523.
  25. Lobanov, M. V.; Li, S.; Greenblatt, M. "Structural, magnetic, and transport properties of the two electron-doped ruddlesden-popper manganites ca3-xthxmn2o7" Chemistry of Materials 2003, 15, 1302.
  26. Lu, X.-J.; Olson, W. K. "3dna: A software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures" Nucleic Acids Research 2003, 31, 5108.
  27. Maitra, N. T.; Souza, I.; Burke, K. "Current-density functional theory of the response of solids" Physical Review B: Condensed Matter and Materials Physics 2003, 68, 045109/1.
  28. Maitra, N. T.; Wasserman, A.; Burke, K. "What is time-dependent density functional theory? Successes and challenges" Electron Correlations and Materials Properties 2, [Proceedings of the International Workshop on Electron Correlations and Materials Properties], 2nd, Rhodes, Greece, June 23-29, 2001 2003, 285.
  29. Manning, G. S. "Comments on selected aspects of nucleic acid electrostatics" Biopolymers 2003, 69, 137.
  30. Manning, G. S. "Simple model for the binding of a polyelectrolyte to an oppositely charged curved surface" Journal of Physical Chemistry B 2003, 107, 11485.
  31. McKernan, B. A.; Manning, G. S.; Romsted, L. S. "Estimating concentrations of condensed counterions around a polyelectrolyte by chemical trapping" ACS Symposium Series 2003, 832, 184.
  32. McLaughlin, W. A.; Berman, H. M. "Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif" Journal of Molecular Biology 2003, 330, 43.
  33. Minetti, C. A. S. A.; Remeta, D. P.; Zharkov, D. O.; Eric Plum, G.; Johnson, F.; Grollman, A. P.; Breslauer, K. J. "Energetics of lesion recognition by a DNA repair protein: Thermodynamic characterization of formamidopyrimidine-glycosylase (fpg) interactions with damaged DNA duplexes" Journal of Molecular Biology 2003, 328, 1047.
  34. Moss, R. A.; Fu, X.; Ma, Y.; Sauers, R. R. "2-thienylchlorocarbene: Reactivity toward alkenes" Tetrahedron Letters 2003, 44, 773.
  35. Moss, R. A.; Gong, P. K. "Proton exchange and chemoselectivity in metal cation and hydroxide ion hydrolyses of phosphonoacetate diesters" Tetrahedron Letters 2003, 44, 7845.
  36. Moss, R. A.; Johnson, L. A.; Kacprzynski, M.; Sauers, R. R. "Fragmentation of menthyl- and neomenthyloxychlorocarbenes: Elimination and substitution reactions of alicyclic oxychlorocarbenes" Journal of Organic Chemistry 2003, 68, 5114.
  37. Moss, R. A.; Tian, J. "Amplification of diastereoselectivity by cyclodextrins in the copper-mediated cleavages of methylphosphonamidothioates" Tetrahedron Letters 2003, 44, 4295.
  38. Pan, L.; Liu, H.; Kelly, S. P.; Huang, X.; Olson, D. H.; Li, J. "Rpm-2: A recyclable porous material with unusual adsorption capability: Self assembly via structural transformations" Chemical Communications (Cambridge, United Kingdom) 2003, 854.
  39. Pan, L.; Liu, H.; Lei, X.; Huang, X.; Olson, D. H.; Turro, N. J.; Li, J. "Rpm-1: A recyclable nanoporous material suitable for ship-in-bottle synthesis and large hydrocarbon sorption" Angewandte Chemie, International Edition 2003, 42, 542.
  40. Pophristic, V.; Goodman, L. "Analysis of the gearing-antigearing torsional fundamental energy gap in dimethyl ether" Journal of Physical Chemistry A 2003, 107, 3538.
  41. Popov, G.; Goldsmith, J.; Greenblatt, M. "Effects of vacancy concentration on the magnetic and transport properties of (la1-xpbx)1-y.Box.Ymno3" Journal of Solid State Chemistry 2003, 175, 52.
  42. Popov, G.; Greenblatt, M.; Croft, M. "Large effects of a-site average cation size on the properties of the double perovskites ba2-xsrxmnreo6: A d5-d1 system" Physical Review B: Condensed Matter and Materials Physics 2003, 67, 024406/1.
  43. Potapenko, D. V.; Sysoev, S. E.; Ermakov, A. V.; Hinch, B. J.; Strongin, D. R.; Wright, A. P.; Kuivila, C. "Chlorine-induced restructuring of the cu/si(111) surface" Physical Review B: Condensed Matter and Materials Physics 2003, 68, 075408/1.
  44. Renkema, K. B.; Kissin, Y. V.; Goldman, A. S. "Mechanism of alkane transfer-dehydrogenation catalyzed by a pincer-ligated iridium complex" Journal of the American Chemical Society 2003, 125, 7770.
  45. Roth, H. D. "Electron-transfer photochemistry of cis- and trans-1,2-diphenylcyclopropane with singlet acceptors: Recombination of radical ion pairs of singlet and triplet multiplicity" Journal of Physical Chemistry A 2003, 107, 3432.
  46. Sarafianos, S. G.; Clark, A. D., Jr.; Tuske, S.; Squire, C. J.; Das, K.; Sheng, D.; Ilankumaran, P.; Ramesha, A. R.; Kroth, H.; Sayer, J. M.; Jerina, D. M.; Boyer, P. L.; Hughes, S. H.; Arnold, E. "Trapping hiv-1 reverse transcriptase before and after translocation on DNA" Journal of Biological Chemistry 2003, 278, 16280. 
  47. Sayan, S.; Garfunkel, E.; Nishimura, T.; Schulte, W. H.; Gustafsson, T.; Wilk, G. D. "Thermal decomposition behavior of the hfo2/sio2/si system" Journal of Applied Physics 2003, 94, 928.
  48. Schmeltzer, R. C.; Anastasiou, T. J.; Uhrich, K. E. "Optimized synthesis of salicylate-based poly( anhydride-esters)" Polymer Bulletin (Berlin, Germany) 2003, 49, 441.
  49. Shallop, A. J.; Gaffney, B. L.; Jones, R. A. "Use of 13c as an indirect tag in 15n specifically labeled nucleosides. Syntheses of [8-13c-1,7,nh2-15n3]adenosine, -guanosine, and their deoxy analogues" Journal of Organic Chemistry 2003, 68, 8657.
  50. Shangguan, N.; Katukojvala, S.; Greenberg, R.; Williams, L. J. "The reaction of thio acids with azides: A new mechanism and new synthetic applications" Journal of the American Chemical Society 2003, 125, 7754.
  51. Shin, Y.-G. K.; Newton, M. D.; Isied, S. S. "Distance dependence of electron transfer across peptides with different secondary structures: The role of peptide energetics and electronic coupling" Journal of the American Chemical Society 2003, 125, 3722.
  52. Sim, E.; Larkin, J.; Burke, K.; Bock, C. W. "Testing the kinetic energy functional: Kinetic energy density as a density functional" Journal of Chemical Physics 2003, 118, 8140.
  53. Stibrany, R. T.; Schugar, H. J.; Potenza, J. A. "2,2'-bis(1-ethylbenzimidazol-2-yl)biphenyl" Acta Crystallographica, Section E: Structure Reports Online 2003, E59, o693.
  54. Stibrany, R. T.; Schugar, H. J.; Potenza, J. A. "A pentanuclear complex exhibiting two short ni-cu distances" Acta Crystallographica, Section E: Structure Reports Online 2003, E59, m630.
  55. Stibrany, R. T.; Schugar, H. J.; Potenza, J. A. "(s,s)-1,2-bis(1-methylbenzimidazol-2-yl)-1',2'-bis(methoxy)ethane" Acta Crystallographica, Section E: Structure Reports Online 2003, E59, a1448.
  56. Tian, L.; Zhou, N.; Yam, L.; Wang, J.; Uhrich, K. E. "The core cross-linkable micelles from peg-lipid type amphiphiles" Polymeric Materials Science and Engineering 2003, 89, 61.
  57. Toby, S.; Tobias, I. "What is the overall stoichiometry of a complex reaction?" Journal of Chemical Education 2003, 80, 520.
  58. Westbrook, J.; Feng, Z.; Chen, L.; Yang, H.; Berman, H. M. "The protein data bank and structural genomics" Nucleic Acids Research 2003, 31, 489.
  59. Yang, H.; Jossinet, F.; Leontis, N.; Chen, L.; Westbrook, J.; Berman, H.; Westhof, E. "Tools for the automatic identification and classification of RNA base pairs" Nucleic Acids Research 2003, 31, 3450.
  60. Ye, Y.; Muller James, G.; Luo, W.; Mayne Charles, L.; Shallop Anthony, J.; Jones Roger, A.; Burrows Cynthia, J. "Formation of (13)c-, (15)n-, and (18)o-labeled guanidinohydantoin from guanosine oxidation with singlet oxygen. Implications for structure and mechanism" JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 2003, 125, 13926.
  61. Zhang, X.; Emge, T. J.; Goldman, A. S. "Synthesis and crystal structure of a coordinatively unsaturated organomercury iridium complex (pcp) ir(hgph) cl (pcp = h3-2,6-(tbu2pch2)2c6h3)" Journal of Chemical Crystallography 2003, 33, 613.
  62. Zhang, X.; Fried, A.; Knapp, S.; Goldman, A. S. "Novel synthesis of enamines by iridium-catalyzed dehydrogenation of tertiary amines" Chemical Communications (Cambridge, United Kingdom) 2003, 2060.
  63. Ziegel, R.; Shallop, A.; Jones, R.; Tretyakova, N. "K-ras gene sequence effects on the formation of 4-(methylnitrosamino)-1-(3-pyridyl)-1-butanone (nnk)-DNA adducts" Chemical Research in Toxicology 2003, 16, 541.
Chemistry Home - Rutgers Home | Search